L. S. Premkumar, S. H. Chung and P. W. Gage. GABA-induced potassium channels in cultured neurons. Proceedings of the Royal Society, London B241, 133-138, 1990.
S. H. Chung, J. B. Moore, L. Xia, L. S. Premkumar and P. W. Gage.
Characterization of single channel currents using digital signal processing techniques based on hidden Markov models. Philosophical Transactions of the Royal Society, London B329, 256-285, 1990.
PDF: full article
L. S. Premkumar, P. W. Gage and S. H. Chung. Coupled potassium channels induced by arachidonic acid in cultured neurons. Proceedings of the Royal Society, London B242, 17-22, 1990.
V. Krishnamurthy, J. B. Moore and S. H. Chung. On hidden fractal model signal processing. Information Theory and Application 16, 243-246, 1990.
V. Krishnamurthy, J. B. Moore and S. H. Chung. On hidden fractal model signal processing. Signal Processing 24, 177-192, 1991.
S. H. Chung and R. A. Kennedy.
Forward-backward non-linear filtering technique for extracting small biological signals from noise. Journal of Neuroscience Methods 40, 71-86, 1991.
PDF: full article
S. H. Chung, V. Krishnamurthy and J. B. Moore.
Adaptive processing techniques based on hidden Markov models for characterizing very small channel currents in noise and deterministic
interferences. Philosophical Transactions of the Royal Society, London B334, 243-284, 1991.
PDF: full article
R. A. Kennedy and S. H. Chung.
Identification of coupled Markov chain model with application. IEEE (Transactions on Decision & Control) 4, 3529-3534, 1992.
PDF: full article
S. Vasudevan, L. Premkumar, S. Stowe, P. W. Gage, H. Reilander and S.H. Chung. Muscarinic acetylcholine receptor produced in recombinant baculovirus infected Sf9 insect cells couples with endogenous G-protein to activate ion channels. FEBS Letters 411, 7-11, 1992.
S. H. Chung and G. W. Pulford.
Fluctuation analysis of patch-clamp or whole-cell recordings containing many single channels. Journal of Neuroscience Methods 50, 369-384, 1993.
PDF: full article
V. Krishnamurthy, J. B. Moore and S. H. Chung. Hidden Markov model signal processing in presence of unknown deterministic interference. IEEE Transactions on Automatic Control 38, 146-152, 1993.
S. Kuyucak and S. H. Chung. Temperature dependence of conductivity in electrolyte solutions and ionic channels of biological membrane. Biophysical Chemistry 52, 15-24, 1994.
P. W. Gage and S. H. Chung. Influence of membrane potential on conductance sublevels of chloride channels activated by GABA. Proceedings of the Royal Society, London B225, 167-172, 1994.
D. A. Saint, M. K. Pugsley and S. H. Chung. An analysis of cardiac sodium channel properties using digital signal processing techniques. Biochimica et Biophysica Acta 1196, 131-138, 1994.
L. J. Reece, S. S. Dhanjal and S. H. Chung. Zinc induces hyper-excitability in the hippocampus. Neuroreport 5, 2669-2672, 1994.
G. W. Pulford, R. A. Kennedy and S. H. Chung.
Identification of individual kinetics from recordings containing many identical channels. Signal Processing 43 (No. 2), 207-221, 1995.
PDF: full article
G. W. Pulford, J. C. Gallant, R. A. Kennedy and S.H. Chung.
Evaluation and estimation of various Markov models with applications to membrane channel kinetics. Biometrical Journal 37 (1), 39-63, 1995.
PDF: full article
L. S. Premkumar and S. H. Chung. Activation of K+ Channels by stimulation of metabotropic glutamate receptors. Neuro-Report 6, 765-768, 1995.
T. Milburn, D. Saint and S. H. Chung. The temperature dependence of conductance of the cardiac sodium channel: implications for mechanisms of ion permeation. Receptors & Channels 3, 201-211, 1995.
S. H. Chung and S. Kuyucak. Temperature-dependent changes in the characteristics of NMDA-activated channels in hippocampal neurons. Neuroscience Letters 187, 181-184, 1995.
R. A. Kennedy & S. H. Chung. Modelling and identification of coupled Markov chain model with application. International Journal of Adaptive Control & Signal Processing 10, 623-634, 1996.
D. Poskitt and S. H. Chung.
Markov chain models, time series analysis and extreme value theory. Advances in Applied Probability 28, 405-425, 1996.
PDF: full article
S. H. Chung and R. A. Kennedy.
Coupled Markov chain model: characterization of membrane channel currents with multiple conductance sublevels as partially coupled
pores. Mathematical Biosciences 133, 111-137, 1996.
PDF: full article
M. Hoyles, S. Kuyucak and S. H. Chung.
Energy barrier presented to ions by the vestibule of the biological membrane channel. Biophysical Journal 70, 1628-1642, 1996.
PDF: full article
T. W. Allen and C. J. Burden.
Positronium States in three-dimensional QED. Phys. Rev. D 53, 5842-5855, 1996.
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T. W. Allen and C. J. Burden.
Vector Positronium States in three-dimensional QED. Phys. Rev. D 55, 4954-4966, 1997.
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Postscript: full article - gzipped
S. Kuyucak, M. Hoyles and S. H. Chung.
Analytical solutions of Poisson's equation for realistic geometrical shapes of membrane ion channels. Biophysical Journal 74, 22-36, 1998.
PDF: full article
S. C. Li, M. Hoyles, S. Kuyucak and S. H. Chung.
Brownian dynamics study of ion transport in the vestibule of membrane channels. Biophysical Journal 74, 37-47, 1998.
PDF: full article
S. H. Chung and P. W. Gage.
Signal processing techniques for channel current analysis based on hidden Markov models. Methods in Enzymology 293, 420-438, 1998.
PDF: full article
S. H. Chung, T. Allen, M. Hoyles and S. Kuyucak.
Study of ionic currents across a model membrane channel using Brownian dynamics. Biophysical Journal 75, 793-809, 1998.
Biophysical Journal: Online version
PDF: full article
M. Hoyles, S. Kuyucak and S. H. Chung.
Computer simulation of ion conductance in membrane channels. Physical Review E 58, 3654-3661, 1998.
PDF: full article
M. Hoyles, S. Kuyucak and S. H. Chung.
Solutions of Poisson's equation in channel-like geometries. Computer Physics Communications 115, 45-68, 1998.
PDF: full article
D. Poskitt, K. Dogancay and S. H. Chung.
Double blind deconvolution: the analysis of postsynaptic currents in nerve cells. Journal of the Royal Statistical Society B61, 191-212, 1999.
PDF: full article
D. Saint and S. H. Chung. Variability of channel subconductance states of the cardiac sodium channel induced by protease. Receptors and Channels 6, 283-294, 1999.
T. W. Allen, M. Hoyles, S. Kuyucak and S. H. Chung.
Molecular and Brownian dynamics study of ion permeation across the potassium channel. Chemical Physics Letters 313, 358-365, 1999.
PDF: full article
T. W. Allen, S. Kuyucak and S. H. Chung.
Molecular dynamics study of the KcsA potassium channel. Biophysical Journal 77, 2502-2516, 1999.
Biophysical Journal: Online version
PDF: full article
S. H. Chung, T. W. Allen, M. Hoyles and S.Kuyucak.
Permeation of ions across the potassium channel: Brownian dynamics studies. Biophysical Journal 77, 2517-2533, 1999.
Biophysical Journal: Online version
PDF: full article
D. S. Poskitt, K. Dogancay and S. H. Chung.
A new analytical method of studying post-synaptic currents in the brain. Mathematical Biosciences 161, 15-41, 1999.
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T. W. Allen, S. Kuyucak and S. H. Chung.
The effect of hydrophobic and hydrophilic channel walls on the structure and diffusion of water and ions. Journal of Chemical Physics 111 (No. 17), 7985-7999, 1999.
Journal of Chemical Physics: Online version
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Postscript: full article - gzipped
B. Corry, S. Kuyucak and S. H. Chung.
Test of Poisson-Nernst-Planck theory of ion channels. Journal of General Physiology 114, 597-599, 1999.
Journal of General Physiology: Online version
PDF: full article
B. Corry, S. Kuyucak and S. H. Chung.
Invalidity of continuum theories of electrolytes in nanopores. Chemical Physics Letters 320, 35-41, 2000.
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G. Moy, B. Corry, S. Kuyucak and S. H. Chung.
Tests of continuum theories as models of ion channels: I. Poisson-Boltzmann theory versus Brownian dynamics. Biophysical Journal 78, 2349-2363, 2000.
Biophysical Journal: Online version
PDF: full article
B. Corry, S. Kuyucak and S. H. Chung.
Tests of continuum theories as models of ion channels: II. Poisson-Nernst-Planck theory versus Brownian dynamics. Biophysical Journal 78, 2364-2381, 2000.
Biophysical Journal: Online version
PDF: full article
T. W. Allen, A. Bliznyuk, A. P. Rendell, S.Kuyucak and S. H. Chung.
The potassium channel: structure, selectivity and diffusion. Journal of Chemical Physics 112, 8191-8204, 2000.
Journal of Chemical Physics: Online version
PDF: full article
T. Allen, S. Kuyucak and S. H. Chung.
Molecular dynamics estimate of ion diffusion in model hybrophobic and the KcsA potassium channels. Biophysical Chemistry 86, 1-14, 2000.
PDF: full article
B. Corry, T. W. Allen, S. Kuyucak and S. H. Chung.
A model of calcium channels. Biochimica et Biophysica Acta 1509, 1-6, 2000.
Biochimica et Biophysica Acta: Online version
PDF: full article
S. H. Chung and S. Kuyucak.
Predicting channel function from channel structure using Brownian dynamics simulations. Clinical & Experimental Pharmacology & Physiology 28, 89-94, 2001.
PDF: full article
B. Corry, T. W. Allen, S. Kuyucak and S. H. Chung.
Mechanisms of permeation and selectivity in calcium channels. Biophysical Journal 80, 195-214, 2001.
Biophysical Journal: Online version
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T. Allen and S. H. Chung.
Brownian dynamics study of an open-state KcsA potassium channel. Biochimica et Biophysica Acta - Biomembranes 1515, 83-91, 2001.
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S. Kuyucak, O. S. Andersen and S. H. Chung.
Models of permeation in ion channels. Reports on Progress in Physics 64, 1427-1472, 2001.
IOP Science: Online version
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A. A. Bliznyuk, A. P. Rendell, T. W. Allen and S.H. Chung.
The potassium channel: comparison of linear scaling semiempirical and molecular mechanics representations of the electrostatic
potential. Journal of Physical Chemistry 105, 12674-12679, 2001.
PDF: full article
S. H. Chung, T. W. Allen and S. Kuyucak.
Modeling diverse range of potassium channels with Brownian dynamics. Biophysical Journal 83, 263-277, 2002.
PDF: full article
[For an editorial comment on Chung et al. (2002), see Jordan, P. C. "Unclogging a pipe: potassium channel pinball". Biophysical Journal 83, 2-4, 2002.]
S. H. Chung, T. W. Allen and S. Kuyucak.
Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations. Biophysical Journal 82, 628-645, 2002.
PDF: full article
S. Kuyucak and S. H. Chung.
Permeation models and structure-function relationships in ion channels. Journal of Biological Physics 28, 289-308, 2002.
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S. Edwards, B. Corry, S. Kuyucak and S. H.Chung.
Continuum electrostatics fails to describe ion permeation in the gramicidin channel. Biophysical Journal 83, 1348-1360, 2002.
Biophysical Journal: Online version
PDF: full article
[For an editorial comment on Edwards et al. (2002), see Jordan, P. C. "Trial by ordeal: ionic free energies in gramicidin". Biophysical Journal 83, 1235-1236, 2002.]
B. Corry, M. Hoyles, T. Allen, M. Walker, S. Kuyucak and S. H. Chung.
Reservoir boundaries in Brownian dynamics simulations of ion channels. Biophysical Journal 82, 1975-1982, 2002.
Biophysical Journal: Online version
PDF: full article
S. H. Chung and S. Kuyucak.
Ion channels: recent progress and prospect. European Biophysics Journal 31, 283-293, 2002.
PDF: full article
S. H. Chung and Serdar Kuyucak.
Recent advances in ion channel research. Biochimica et Biophysica Acta - Biomembranes 1565, 267-286, 2002.
PDF: full article
T. W. Allen, T. Bastug, S. Kuyucak and S. H. Chung.
Gramicidin A channel as a test ground for molecular dynamics force fields. Biophysical Journal 84, 2159-2168, 2003.
PDF: full article
B. Corry, S. Kuyucak and S. H. Chung.
Dielectric self-energy in Poisson-Boltzmann and Poisson-Nernst-Planck models of ion channels. Biophysical Journal 84, 3594-3606, 2003.
Biophysical Journal: Online version
PDF: full article
M. O'Mara, P. H. Barry and S. H. Chung.
A model of the glycine receptor deduced from Brownian dynamics studies. Proceedings of the National Academy of Sciences USA 100, 4310-4315, 2003.
PDF: full article
V. Krishnamurthy and S. H. Chung.
Adaptive learning algorithms for Nernst potential and current-voltage curves in nerve cell membrane ion channels. IEEE Transaction on NanoBioscience 2 (No. 4), 266-278, 2004.
PDF: full article
B. Corry, M. O'Mara and S. H. Chung.
Conduction mechanisms of chloride ions in ClC-type channels. Biophysical Journal 86, 846-860, 2004.
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B. Corry, M. O'Mara and S. H. Chung.
Permeation dynamics of chloride ions in the ClC- 0 and ClC-1 channels. Chemical Physics Letters 386, 233-238, 2004.
PDF: full article
S. H. Chung and D. P. Tieleman.
Computational and theoretical approaches to unraveling the permeation dynamics in biological nanotubes. In: M. Rieth and
W. Schommers (eds.). Computational Nanotechnology. American Scientific Publishers, CA. Vol 6. Chapter 12, pp. 567-637.
PDF: full article
T. Vora, B. Corry and S. H. Chung.
A model of sodium channels. Biochimica et Biophysica Acta - Biomembranes 1668, 106-116, 2004.
PDF: full article
B. Corry and S. H. Chung.
Influence of protein flexibility on the electrostatic energy landscape in gramicidin A. European Biophysics Journal 34, 208-216, 2005.
PDF: full article
V. Krishnamurthy and S. H. Chung.
Brownian dynamics simulation for modelling ion permeation across bionanotubes. IEEE Transactions on NanoBioscience 4, 102-111, 2005.
PDF: full article
V. Krishnamurthy and S. H. Chung.
Ion channels - estimation and control at macroscopic and nano scales. Australian Journal of Electrical and Electronic Engineering 2, 59-68, 2005.
PDF: full article
B. Corry, T. Vora and S. H. Chung.
Electrostatic basis of valence selectivity in cationic channels. Biochimica et Biophysica Acta - Biomembranes 1711, 72-86, 2005.
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V. Krishnamurthy, S. H. Chung and G. Dumont.
Editors. Ion Channels: Bionanotubes. Special Issue of IEEE Transactions on Nanobioscience 4,1-132. IEEE Press, March 2005.
IEEE Transactions on Nanobioscience: Online version
M. L. O'Mara, B. Cromer, M. W. Parker and S. H. Chung.
Homology model of the GABAA receptor examined using Brownian dynamics. Biophysical Journal 88, 3286-3299, 2005.
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D. Bisset, B. Corry and S. H. Chung.
The fast gating mechanism in ClC-0 channels. Biophysical Journal 89, 179-186, 2005.
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S. H. Chung and B. Corry.
Three computational methods for studying permeation, selectivity and dynamics in biological ion channels. Soft Matters 1, 417-427, 2005.
PDF: full article softmattercover.pdf
B. Corry and S. H. Chung.
Mechanisms of valence selectivity in biological ion channels. Cellular & Molecular Life Sciences 63, 301-315, 2006.
PDF: full article
V. Krishnamurthy and S. H. Chung.
Adaptive Brownian dynamics simulation for estimating potential of mean force in ion channel permeation. IEEE Transactions on Nanobioscience 5, 126-138, 2006.
PDF: full article
S. H. Chung, O. S. Andersen and V. Krishnamurthy.
Editors. Handbook of Ion Channels: Dynamics, Structure, and Applications. Springer Verlag, New York.
PDF:
Chapter 00
Chapter 01
Chapter 02
Chapter 03
Chapter 04
Chapter 05
Chapter 06
Chapter 07
Chapter 08
Chapter 09
Chapter 10
Chapter 11
Chapter 12
Chapter 13
Chapter 14
Chapter 15
Chapter 16
Chapter 17
Chapter 18
Chapter 19
S. H. Chung and V. Krishnamurthy.
Brownian dynamics: a powerful tool for studying ion permeation in bio-nanotubes.
In: Handbook of Ion Channels: Dynamics, Structure, and Applications. S. H. Chung, O. S. Andersen and V. Krishnamurthy (eds.), Springer Verlag, New York. Chapter 15.
PDF: Chapter 15
V. Krishnamurthy and S. H. Chung.
Signal processing based on hidden Markov models for extracting small channel currents.
In: Handbook of Ion Channels: Dynamics, Structure, and Applications. S. H. Chung, O. S. Andersen and V. Krishnamurthy (eds.), Springer Verlag, New York. Chapter 19.
PDF: Chapter 19
T. Vora, B. Corry and S. H. Chung.
Brownian dynamics investigation into the conductance state of the MscS channel crystal structure. Biochimica et Biophysica Acta - Biomembranes 1758, 730-737, 2006.
PDF: full article
V. Krishnamurthy, M. Hoyles, R. Saab and S. H. Chung.
Permeation in gramicidin ion channels by directly estimating the potential of mean force using Brownian dynamics. Journal of Computational and Theoretical Nanoscience 3, 702-711, 2006.
PDF: full article
V. Krishnamurthy and S. H. Chung.
Large-scale dynamical models and estimation for permeation in biological membrane ion channels. Proceedings of the IEEE 95 (5), 853-880, 2007.
PDF: full article
V. Krishnamurthy, T. Vora and S. H. Chung.
Adaptive Brownian dynamics for shape estimation of sodium ion channels. Journal of Nanoscience and Nanotechnology 7, 1-9, 2007.
PDF: full article
S. H. Chung and B. Corry.
Conduction properties of KcsA measured using Brownian dynamics with flexible carbonyl groups in the selectivity filter. Biophysical Journal 93, 44-53, 2007.
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S. H. Chung.
Bionanotubes: the ultimate units of the physiology of life. Australian Physics 44, 16-17, 2007.
PDF: full article
Jin Aun Ng, Taira Vora, Vikram Krishnamurthy and Shin-Ho Chung.
Estimating the dielectric constant of the channel protein and pore. European Biophysics Journal 37, 213-222, 2008.
PDF: full article
Matthew Holyles, Vikram Krishnamurthy, May Siksik, and Shin-Ho Chung.
Brownian dynamics theory for predicting internal and external blockages of tetraethylammonium in the KcsA potassium channel. Biophysical Journal 94, 366-378, 2008.
PDF: full article
Taira Vora, David Bisset and Shin-Ho Chung.
Conduction of Na+ and K+ through the NaK Channel: Molecular and Brownian Dynamics Studies. Biophysical Journal 95, 1600-1611, 2008.
PDF: full article
Dan Gordon, Vikram Krishnamurthy and Shin-Ho Chung.
A Generalised Langevin Algorithm for Studying Permeation Across Biological Ion Channels. Molecular Physics 106 (No. 11), 1353-1361, 2008.
PDF: full article
David Bisset and Shin-Ho Chung.
Efficacy of External Tetraethylammonium Block of the KcsA Potassium Channel: Molecular and Brownian Dynamics Studies. Biochimica et Biophysica Act - Biomembrane 1778, 2273-2282, 2008.
PDF: full article
Taira Vora, Ben Corry and Shin-Ho Chung.
Brownian dynamics study of flux ratios in sodium channels. European Biophysical Journal 38, 45-52, 2008.
PDF: full article
Tamsyn A. Hilder, Daniel Gordon, and Shin-Ho Chung.
Salt rejection and water transport through boron nitride nanotubes. Small 5, 2183-2190, 2009.
PDF: full article cover image
DOI: 10.1002/smll.200900349
Tamsyn A. Hilder, Daniel Gordon, and Shin-Ho Chung.
Boron nitride nanotubes selectively permeable to cations or anions. Small 5, 2870-2875, 2009.
PDF: full article
DOI: 10.1002/smll.200901229
Dan Gordon, Vikram Krishnamuthy and Shin-Ho Chung.
Generalized Langevin models of molecular dynamics simulations, with applications to ion channels. Journal of Chemical Physics 131, 134102-1 - 134102-11, 2009.
PDF: full article
Dan Gordon, Matthew Hoyles and Shin-Ho Chung.
An algorithm for rigid-body Brownian dynamics. Physical Review E 80, 066703-1 - 066703-12, 2009.
PDF: full article
Tamsyn A. Hilder, Rui Yang, V. Ganesh, Dan Gordon, Andrey Bliznyuk, Alistair P. Rendell and Shin-Ho Chung.
Validity of current force fields for simulations on boron nitride nanotubes. Micro & Nano Letters 5, 150-156, 2010.
PDF: full article
Tamsyn A. Hilder, Dan Gordon and Shin-Ho Chung.
Synthetic chloride-selective carbon nanotubes examined using molecular and stochastic dynamics. Biophysical Journal 99, 1734-1742, 2010.
PDF: full article
Tamsyn A. Hilder, Dan Gordon and Shin-Ho Chung.
Synthetic cation-selective nanotube: permeant cations chaperoned by anions. Chemical Physics Letters, 133, 000000-1 - 000000-7, 2010.
PDF: full article
Tamsyn A. Hilder, and Shin-Ho Chung.
Carbon nanotube as a gramacidin analogue. The Journal of Chemical Physics, 501, 423-426, 2011.
PDF: full article
Surajith N. Wanasundara, Vikram Krishnamurthy, and Shin-Ho Chung.
Free energy calculations of gramicidin dimer dissociation. J. Phys. Chem. B, 115, 13765-13770, 2011.
PDF: full article
Dan Gordon, and Shin-Ho Chung.
Permeation and block of the kv1.2 channel examined using brownian and molecular dynamics. Biophysical Journal, 101, 2671-2678, 2011.
PDF: full article
Rong Chen, Anna Robinson, Dan Gordon, and Shin-Ho Chung.
Modeling the binding of three toxins to the voltage-gated potassium channel (kv1.3). Biophysical Journal, 101, 2652-2660, 2011.
PDF: full article
Tamsyn A. Hilder, Dan Gordon and Shin-Ho Chung.
Computational modeling of transport in synthetic nanotubes: a review. Nanomedicine: Nanotechnology, Biology, and Medicine, 7 702-709, 2011.
PDF: full article
Rui Yang, Tamsyn A. Hilder, Shin-Ho Chung, and Alistair Rendell.
First principles study of water confined in single-walled silicon carbide nanotubes. J. Phys. Chem. C, 115, 17255 - 17264, 2011.
PDF: full article
Tamsyn A. Hilder, Rui Yang, Dan Gordon, Alistair P. Rendell, and Shin-Ho Chung.
Silicon carbide nanotube as a chloride-selective channel. J. Phys. Chem. C, 116, 4465-4470, 2012.
PDF: full article
Dan Gordon, Rong Chen, Junming Ho, Michelle L. Coote, and Shin-Ho Chung.
Rigid body brownian dynamics as a tool for studying ion channel blockers. J. Phys. Chem. B, 116, 1933-1941, 2012.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Engineering a potent and specific blocker of voltage-gated potassium channel kv1.3, a target for autoimmune diseases. Biochemistry, 51, 1976-1982, 2012.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Binding modes of μ-conotoxin to the bacterial sodium channel (NaVAb). Biophysical Journal, 102, 483-488, 2012.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Conserved functional surface of anti-mammalian scorpion β-toxins. J. Phys. Chem. B., 116, 4796 - 4800, 2012.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Structural basis of the selective block of Kv1.2 by maurotoxin from computer simulations. PLoS One, 7, 2012.
PDF: full article
Tamsyn A. Hilder, Ron J. Pace, and Shin-Ho Chung.
Computational design of a carbon nanotube fluorofullerene biosensor. Sensors, 12, 13720-13735, 2012.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Binding modes and functional surface of anti-mammalian scorpion α-toxins to sodium channels. Biochemistry, 51, 7775-7782, 2012.
PDF: full article
Rong Chen, Anna Robinson, and Shin-Ho Chung.
Binding of hanatoxin to the voltage sensor of Kv2.1. Toxins, 4, 1552-1564, 2012.
PDF: full article
Dan Gordon, and Shin-Ho Chung.
Extension of Brownian dynamics for studying blockers of ion channels. Journal of Physical Chemistry B, 116, (49), 14285-14294, 2012.
PDF: full article
Tamsyn A. Hilder, and Shin-Ho Chung.
Conductance properties of the inwardly rectifying channel, Kir3.2: Molecular and Brownian dynamics study. Biochim. Biophys. Acta, 1828, 471-478, 2013.
PDF: full article
Dan Gordon, Rong Chen, and Shin-Ho Chung.
Computational methods of studying the binding of toxins from venomous animals to biological ion channels: theory and application. Physiological Review, 93, 767 - 802, 2013.
PDF: full article
Tamsyn A. Hilder, and Shin-Ho Chung.
Conduction and block of inward rectifier K+ channels: predicted structure of a potent blocker of Kir2.1. Biochemistry, 52, 967-974, 2013.
PDF: full article
Rong Chen and Shin-Ho Chung.
Effect of gating modifier toxins on membrane thickness: Implications for toxin effect on gramicidin and methcanosensitive channels.
Toxins, 5 456-471, 2013.
PDF: full article
Rong Chen and Shin-Ho Chung.
Complex Structures between the N.Type Calcium Channel (CaV2.2) and ω-Conotoxin GVIA Predicted via Molecular Dynamics.
Biochemistry, 52, 3765-3772, 2013.
PDF: full article
Tamsyn A. Hilder and Shin-Ho Chung.
Designing a C84 fullerene as a specific voltage-gated sodium channel blocker.
Nanoscale Research Letters, 8, (323), 1-8, 2013.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Molecular dynamics simulations of scorpion toxin recognition by Ca2+-activated potassium channel KCa3.1.
Biophysical Journal., 8, (105), 1829-1837, 2013.
PDF: full article
Tamsyn A. Hilder, Ben Corry, and Shin-Ho Chung.
Multi-ion versus single-ion conduction mechanisms can yield current rectification in biological ion channels.
Journal of Biological Physics, 10.1007/s10867-013-9338-4, 2014.
PDF: full article
Michael Thomas, Ben Corry, and Tamsyn Hilder.
What Have We Learnt About the Mechanisms of Rapid Water Transport, Ion Rejection and Selectivity in Nanopores from Molecular Simulation?
Small, DOI:10.1002/smll.201302968, 2014.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Mechanism of tetrodotoxin block and resistance in sodium channels.
Biochemical and Biophysical Research Communications, 446, 370-374, 2014.
PDF: full article
Rong Chen, Anna Robinson, and Shin-Ho Chung.
Mechanism of μ-conotoxin PIIIA binding to the voltage-gated Na+ channel Nav1.4.
PLOS ONE, 9, 2014.
PDF: full article
Rong Chen and Shin-Ho Chung.
Binding Modes of Two Scorpion Toxins to the Voltage-Gated Potassium Channel Kv1.3 Revealed from Molecular Dynamics.
Toxins, 6, 2149-2161, 2014.
PDF: full article
Rong Chen, Ganna Gryn'ova, Yingliang Wu, Michelle L. Coote, and Shin-Ho Chung.
Mechanisms and Energetics of Potassium Channel Block by Local Anesthetics and Antifungal Agents.
Biochemistry, 53, 6786-6792, 2014.
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Tamsyn A. Hilder, Pietro Ridone, Yoshitaka Nakayama, Boris Martinac, and Shin-Ho Chung.
Binding of fullerenes and nanotubes to MscL.
Scientific Reports, 4, 2014.
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Tamsyn A. Hilder.
Global health and environmental implications of mimicking biological ion channels using nanotubes.
In:
Nanotechnology Toward the Sustainocene (eds. T. A. Faunce),
Pan Stanford Publishing Pte. Ltd., Chapter 6, pp 123-138, 2015.
PDF: full article
Michael Thomas, Ben Corry, Shin-Ho Chung, and Tamsyn A. Hilder.
Modeling selective transport and desalinatio.
In: Nanotubes and nanosheets: Functionalization and Application,
(ed. Y. Chen), CRC Press. Chapter 12, pp. 305-330, 2015.
PDF: full article
Rong Chen, and Shin-Ho Chung.
Molecular dynamics simulations of Na+ and leucine transport by LeuT.
Biochemical and Biophysical Research Communications, 464, pp 281-285, 2015.
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Michael Thomas, Marta Enciso, and Tamsyn A. Hilder.
Insertion Mechanism and Stability of Boron Nitride Nanotubes in Lipid Bilayers.
J. Phys. Chem. B., 119, pp 4929-4936, 2015.
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Rong Chen and Shin-Ho Chung.
Computational studies of venom peptides targeting potassium channels.
Toxins, 7, pp 5194-5211, 2015.
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Rong Chen, Derong Lu, Zili Xie, Jing Feng, Zhongfan Jia, Junming Ho, Michelle L. Coote, Yingliang Wu, Michael J. Monteiro, Shin-Ho Chung.
Peptidomimetic Star Polymers for Targeting Biological Ion Channels.
PloS ONE, 11, e0152169, 2016.
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Daxu Li, Rong Chen, and Shin-Ho Chung.
Molecular dynamics of the honey bee toxin tertiapin binding to Kir3.2.
Biophysical Chemistry 219, 43-48, 2016.
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Tamsyn A. Hilder, Anna Robinson, and Shin-Ho Chung.
Functional fullerene targeting human voltage-gated channel, hNa(v)1.7.
ACS Chemical Neuroscience 8, 1747-1755, 2017.
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Tamsyn A. Hilder, Daniel Gordon, and Shin-Ho Chung.
Boron nitride nanotubes selectively permeable to cations or anions. Small 5, 2870-2875, 2009.
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DOI: 10.1002/smll.200901229
Venemous bytes. ANU Reporter , Autumn, 2013.
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