All 2011 Publications


Al Nadaf S., Waters, P.D., Koina, E., Deakin, J.E., Jordan, K.S. and Graves, J.A. Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic Genome Biology.

Albarracin, R., Eells, J.,Valter, K. Photobiomodulation protects the retina from light-induced photoreceptor degeneration. Investigative Ophthalmology and Visual Science.

Albrecht V., Estavillo G.M., Cuttriss A.J. and Pogson B.J. Identifying chloroplast biogenesis and signalling mutants in Arabidopsis thaliana. Methods in Molecular Biology 684:257-72 Arnett, S.V., Alleva, L.M., Korossy-Horwood, R., Clark, I.A. Chronic fatigue syndrome - a neuroimmunological model. Medical Hypotheses.

Arnett, S.V., Alleva, L.M., Korossy-Horwood, R., Clark, I.A. Chronic fatigue syndrome - a neuroimmunological model. Medical Hypotheses.

Ayub, G., Smith, R., Tissue, D.T. and Atkin, O.K. Impacts of drought on leaf respiration in darkness and in the light in Eucalyptus saligna exposed to industrial-age atmospheric CO_2 and growth temperature. New Phytologist.

Bailey, C.G., Ryan, R.M., Thoeng, A.D., Ng, C., King, K., Vanslambrouck, J.M., Auray-Blais, C., Vandenberg, R.J., Bröer, S., Rasko, J.E. Loss-of-function mutations in the glutamate transporter SLC1A1 cause human dicarboxylic aminoaciduria. Journal of Clinical Investigation. 121(1):446-53.

Booksmythe, I., Jennions M.D., Backwell, P.R.Y. Male fiddler crabs prefer conspecific females but court indiscriminately. Animal Behaviour.

Bröer, S. and Palacin, M.The role of amino acid transporters in inherited and acquired diseases. Biochem J.

Bromham, L. The genome as a life history character: why rate of molecular evolution varies between mammal species. Philosophical Transactions of the Royal Society.

Bromham, L. Wandering drunks and general lawlessness in biology: does diversity and complexity tend to increase in evolutionary systems? Biology & Philosophy.

Byrne, M., Steane, D., Loseph, L., Yeates, D., Jordan, G.J, Crayn, D., Sniderman, K., Aplin, K., Cook, L., Crisp, M.D., Keogh, J.S., Melville, J., Moritz C., Porch, N., Sniderman, J.M.K., Sunnucks, P., and Weston, P.H. Decline of a biome: Evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota. Journal of Biogeography.

Cardillo, M. Phylogenetic structure of mammal assemblages at large geographic scales: linking phylogenetic community ecology with macroecology. Philosophical Transactions of the Royal Society, London, series B.

Catullo, R.A., Doughty, P., Roberts, J.D., Keogh, J.S. Multi-locus phylogeny and taxonomic revision of Uperoleia toadlets (Anura: Myobatrachidae) from the western arid zone of Australia, with a description of a new species. Zootaxa

Crisp, M. D., G. E. Burrows, L. G. Cook, A. H. Thornhill, and D. M. J. S. Bowman. Flammable biomes dominated by eucalypts originated at the Cretaceous-Palaeogene boundary. Nature Communications.

Cuttriss, A.J., Cazzonelli, C.I., Wurtzel, E.T. and Pogson, B.J. Vitamin A (carotenoids). In: Biosynthesis of vitamins in Plants, Eds F. Rébeillé and R. Douce, Advances in Botanical Research

Davidson, A., Nicotra, A., and Jennions, M. Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis. Ecology Letters.

Ebeling, W., Natoli, R.C., Hemmi, J.M. Diversity of colour vision: not all Australian marsupials are trichromatic PLoS One.

Fallow, P.M., Gardner, J.L. and Magrath, R.D. Sound familiar? Acoustic similarity provokes responses to unfamiliar heterospecific alarm calls. Behavioral Ecology.

Fallow, P.M., Gardner, J.L. and Magrath, R.D. Sound familiar? Acoustic similarity provokes responses to unfamiliar heterospecific alarm calls. Behavioral Ecology.

Förster, B., Pogson, B.J., and Osmond C.B. Lutein from de-epoxidation of lutein epoxide replaces zeaxanthin to sustain an enhanced capacity for non-photochemical chlorophyll fluorescence quenching in avocado shade leaves in the dark.Plant Physiol

Fossat, N., Jones, V., Khoo, P.H., Bogani, D., Hardy, A., Steiner, K., Mukhopadhyay, M., Westphal, H., Nolan, P.M., Arkell, R. Tam, P.P.L. Stringent requirement of a proper level of canonical WNT signalling activity for head formation in mouse embryo. Development.

Gabor Miklos, GL, Maleszka, R. Epigenomic communication systems in humans and honey bees: from molecules to behaviour. Hormones & Behavior [COVER ARTICLE]

Grasso, L.C., Negri, A.P., Forêt, Saint, R., Hayward, D.C., Miller, D.J., Ball, E.E. The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology.

Gummer, J.P., Waters, O.D.C., Krill, C., Du Fall, L., Trengove, R.D., Oliver, R.P. and Solomon P.S. Metabolomics Protocols for Filamentous Fungi, in: M. Bolton and B. Thomma (Eds.), Methods in Molecular Biology, Humana Press, New York.

Haff, T.M. and Magrath, R.D. Calling at a cost: elevated nestling calling attracts predators to active nests. Biology Letters.

Hardham, A.R. Confocal microscopy in plant-pathogen interactions. In: Plant Fungal pathogens: Methods and Protocols. Eds: M.D. Bolton and B.P.H.J. Thomma. Humana Press, New York.

Hetherington, S., C. Gally, J.-A. Fritz, J. Polanowska, J. Reboul, Y. Schwab, H. Zahreddine, C. Behm and M. Labouesse. PAT-12, a potential anti-nematode target, is a novel spectraplakin partner essential for C. elegans hemidesmosome integrity and embryonic morphogenesis." Developmental Biology.

Hirsch J., Misson J., Crisp P.A., David P., Bayle V., Estavillo G.M., Javot H., Chiarenza S., Mallory A.C., Maizel A., Declerck M., Pogson B.J., Vaucheret H., Crespi M., Desnos T., Thibaud M-C., Nussaume L., Marin, E. A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 59'->39' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS ONE 6(2): e16724 PUBMED online

Jennions, M.D. and Mengersen K. Meta-analysis. In: Hastings A & Gross L (Eds) Sourcebook of Theoretical Ecology. University of California Press.

Jennions, M.D., Lortie, C., and Koricheva, J. Meta-analysis for evaluation of controversies and theory. In: J. Koricheva, J. Gurevitch, K. Mengersen (Eds) Handbook of Meta-analysis in Ecology and Evolution, Princeton University Press, Princeton

Jiang, C.-D., Wang, X., Gao, H.-Y., Shi, L. and Chow, W. S. Systemic Regulation of Leaf Anatomical Structure, Photosynthetic Performance and High-light Tolerance in Sorghum. Plant Physiology.

Joseph, L., Zeriga, T. Adcock, G. Langmore, N.E. Phylogeography of the little bronze-cuckoo (Chalcites minutillus) in Australia's monsoon tropics. Emu.

Kain (Jones), J.M., Buchanan, J., Boo, S.M., and Lee, K.M. Colpomenia bullosa crust masquerading as Ralfsia verrucosa (Phaeophyceae) in southeast Australia. Phycologia 49 (6), 617-627

Kaneko, H., Dridi, S., Tarallo, V., Gelfand, B. D., Fowler, B. J., Cho, W. G., Kleinman, M. E., Ponicsan, S. L., Hauswirth, W.W., Chiodo, V. A., Kariko, K., Yoo, J. W., Lee, D. K., Hadziahmetovic, M., Song, Y., Misra, S., Chaudhuri, G., Buaas, F.W., Braun, R.E., Hinton, D.R., Zhang, Q., Grossniklaus, H. E., Provis, J. M., et al, and Ambati, J., DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration. Nature.

Kelly, C.D. and Jennions, M.D. Sexual selection, sperm quality & sperm quantity: meta-analyses of strategic ejaculation. Biological Reviews of the Cambridge Philosophical Society.

Kilner, R.M. and Langmore, N.E. Cuckoos versus hosts in insects and birds: adaptations, counter-adaptations and outcomes. Biological Reviews.

Kokko, H. and Heubel, K.U. On depending on fish for a living, and other difficulties of living sustainably, in: B. Calcott, K. Sterelny and R. Joyce (Eds.), Evolution, Cooperation, and Complexity, MIT press.

Kokko, H. and Heubel, K.U. Prudent males, group adaptation, and the tragedy of the commons. Oikos (the Per Brinck Oikos award article).

Kokko, H. Directions in modelling partial migration: how adaptation can cause a population decline and why the rules of territory acquisition matter. Oikos.

Kopecki, Z., O’Neil, G., Arkell, R.M., Cowin, A.J. Flightless I regulates focal adhesion by inhibiting paxillin phosphorylation and suppressing adhesion signaling proteins Src and p130Cas. Journal Investigative Dermatology.

Koricheva, J., Jennions, M.D., and Lau, J. Temporal changes in effect sizes: detection and causes, cumulative meta-analysis In: J. Koricheva, J. Gurevitch, K. Mengersen (Eds) Handbook of Meta-analysis in Ecology and Evolution, Princeton University Press, Princeton

Landstrom, M. T., Heinsohn, R., Langmore, N. E. Does clutch variability differ between populations of cuckoo hosts in relation to the rate of parasitism? Animal Behaviour.

Langmore, N. E., Stevens, M., Maurer, G., Heinsohn, R., Hall, M. L., Peters, A., Kilner, R. M. Visual mimicry of host nestlings by cuckoos. Proceedings of the Royal Society: Biological Sciences.

Lin, C.H., Waters, J.M., Powell, B.C,. Arkell, R.M., and Cowin, A.J. Decreased expression of Flightless I, a gelsolin family member and developmental regulator, in early gestation fetal wounds improves healing. Mammalian Genome.

Lyko, F. and Maleszka, R. Insects as innovative models for functional studies on DNA methylation. Trends in Genetics [COVER ARTICLE]

Maleszka, R. Elucidating the path from genotype to behaviour in honey bees: insights from epigenomics. In: Honeybee Neurobiology and Behavior: A Tribute to Randolf Menzel. Eds . D. Eisenhardt, G. Galizia & M. Giurfa, Chapter VI, Springer Publisher, Berlin

Mautz, B. , & Jennions, M.D. 2011. The effect of competitor presence and relative competitive ability on male mate choice. Behavioral Ecology.

Meier, C.M., Starrfelt, J. & Kokko, H. Mate limitation causes sexes to coevolve towards more similar dispersal kernels. Oikos.

Miller, D.J., Ball, E.E., Forêt, S., Satoh, N. Coral genomics and transcriptomics - ushering in a new era in coral biology. Journal of Experimental Marine Biology and Ecology.

Milner, R.N.C., Jennions, M.D., Backwell, P.R.Y. Non-independent mate choice in a fiddler crab: a case of stimulus enhancement. Behavioral Ecology and Sociobiology.

Natoli, R., Valter, K., Chrysostomou, V., Stone, J., Provis, J. Morphological, functional and gene expression analysis of the hyperoxic mouse retina.

New, S.T.D. and Bull, C.M. Retinal ganglion cell topography and visual acuity of the sleepy lizard (Tiliqua rugosa). Journal of Comparative Physiology- A.

Oguchi, R., Douwstra, P., Fujita, T., Chow, W. S. and Terashima, I. Intra-leaf gradients of photoinhibition induced by different color lights: Implications for the dual mechanisms of photoinhibition and for the application of conventional chlorophyll fluorometers. New Phytologist.

Oguchi, R., Terashima, I., Kou, J. and Chow, W. S. Operation of dual mechanisms that both lead to photoinactivation of Photosystem II in leaves by visible light. Physiologia Plantarum.

Otte, A., Sauter, M., Alleva, L., Baumgarte, S., Klingel, K. and Gabriel, G. Differential host determinants contribute to the pathogenesis of 2009 pandemic H1N1 and human H5N1 influenza A viruses in experimental mouse models. American Journal of Pathology

Otte, A., Sauter, M., Alleva, L., Baumgarte, S., Klingel, K. and Gabriel, G. Differential host determinants contribute to the pathogenesis of 2009 pandemic H1N1 and human H5N1 influenza A viruses in experimental mouse models. American Journal of Pathology.

Patel, V.S., Ezaz, T., Deakin, J.E. and Graves, J.A. Globin gene structure in a reptile supports the transpositional model for amniote - and >-globin gene evolution Chromosome Research.

Pepper, M.R., Fujita, M.K., Moritz, C., and Keogh, J.S. Palaeoclimate change drove diversification among isolated mountain refugia in the Australian arid zone. Molecular Ecology.

Pogson, B,J,, and Albrecht, V. Genetic dissection of chloroplast biogenesis and development: an overview. Plant Physiol.

Rankin, D.J., Dieckmann, U. and Kokko, H. Sexual conflict and the tragedy of the commons. American Naturalist.

Robinson, A.L., Boss, P.K., Heymann, H., Solomon, P.S. and Trengove, R.D. Influence of yeast strain, canopy management, and site on the volatile composition and sensory attributes of Cabernet Sauvignon wines from Western Australia. Journal of Agricultural and Food Chemistry.

Rutar, M., Natoli, R., Valter, K., Provis, J.M. Early focal expression of the chemokine Ccl2 by Müller cells during exposure to damage-inducing bright continuous light. Invest Ophthalmol Vis Sci.

Saur, I.M.L., Oakes, M. Djordjevic, M.A. and Imin, N.. Crosstalk between the nodulation signaling pathway and the autoregulation of nodulation in Medicago truncatula. New Phytologist.

Slatyer, R., Mautz, B., Backwell, P.R.Y., Jennions, M.D. 2011. The genetic benefits of polyandry: a meta-analysis. Biological Reviews.

Slatyer, R., Mautz, B., Backwell, P.R.Y., Jennions, M.D. 2011. The genetic benefits of polyandry: a meta-analysis. Biological Reviews.

Stephenson, D.P., Moore, R.J. and Allison, G.E. Transformation of, and heterologous protein expression in, Lactobacillus agilis and Lactobacillus vaginalis isolates from the chicken gastrointestinal tract. Applied and Environmental Microbiology77:220-228.

Sun, F., Roderick, M. L., Lim, W. H., and Farquhar G. D. Hydro-climatic projections for the Murray Darling Basin based on an ensemble derived from IPCC AR4 climate models. Water Resources Research.

Taylor , R.W. Australasian ants of the subfamily Heteroponerinae (Hymenoptera: Formicidae): (1) General introduction and review of the Heteroponeraleae (Wheeler, 1923) species group, with descriptions of two new species. Myrmecological News 15. (Ross H. Crozier Memorial Volume)

Thomsen, N., Chappell, A., Ali, R., Jones, T., Adams, D., Matthaei, K., Campbell, H.D., Cowin, A. and Arkell, R. Mouse strains for the ubiquitous or conditional overexpression of the Flii gene. Genesis.

Tilley, L., Dixon, M.W. and Kirk, K. The Plasmodium falciparum-infected red blood cell. Int. J. Biochem. Cell Biol.

Torok, V.A., Allison, G.E., Percy, N.J., Ophel-Keller, K. and R. J. Hughes. Influence of in-feed antimicrobials on broiler commensal post-hatch gut microbiota development and performance. Applied and Environmental Microbiology.

van de Pol, M. and Cockburn, A. Identifying the critical climatic time-window that affects trait expression. The American Naturalist.

Vincent, D., Tan, K.-C., Cassidy, L., Solomon, P.S. and Oliver R.P. Proteomic Techniques for Plant-Fungal Interactions, in: M. Bolton and B. Thomma (Eds.), Methods in Molecular Biology, Humana Press, New York.

Woo, N.S., Gordon, M.J., Graham, S.R., Rossel, J.B., Badger, M.R. and Pogson, B.J. A mutation in the purine biosynthetic enzyme ATASE2 impacts high light signalling and acclimation responses in green and chlorotic sectors of Arabidopsis leaves. Functional Plant Biol.

Yabas, M., Teh, C. E., Frankenreiter, S., Lal, D., Roots, C. M., Whittle, B., Andrews, D. T., Zhang, Y., Teoh, N. C., Sprent, J., Tze, L. E., Kucharsky, E. M., Kofler, J., Farell, G. C., Bröer, S., Goodnow, C. C. and Enders, A. ATP11c is critical for the internalization of phosphatidylserine and differentiation of B lymphocytes. Nature Immunol.

Yabas, M., Teh, C. E., Frankenreiter, S., Lal, D., Roots, C. M., Whittle, B., Andrews, D. T., Zhang, Y., Teoh, N. C., Sprent, J., Tze, L. E., Kucharsky, E. M., Kofler, J., Farell, G. C., Bröer, S., Goodnow, C. C. and Enders, A. ATP11c is critical for the internalization of phosphatidylserine and differentiation of B lymphocytes. Nature Immunol.

Yamori, W., Takahashi, S., Makino, A., Price, G.D., Badger, M.R., and von Caemmerer S. The roles of ATP synthase and the cytochrome b6/fcomplexes in limiting chloroplast electron transport and determining photosynthetic capacity. Plant Physiology.

Zishiri, V.K., Hunter, R., Smith, P.J., Taylor, D., Summers, R.L., Kirk, K., Martin, R.E., and Egan, T.J. A series of structurally simple chloroquine chemosensitizing dibemethin derivatives that inhibit chloroquine transport by PfCRT. European Journal of Medicinal Chemistry.